Structure of PDB 6p5k Chain C

Receptor sequence

>6p5kC (length=213) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMME
IMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKK
PKFELGKLMELHG

3D structure

PDB

6p5k The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs.

Chain

Resolution

3.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	C	P24 F25 K28 K56 V66 H101 S112 V114 K115 K116 W117 Q118 M120 H124 R136 F138 R146 N148 Q149 I150 R151 Y155 Q157 H158 Q160 R162 R165 Q202 S203 I204 Y205 P206 K214 K216	P4 F5 K8 K36 V46 H81 S92 V94 K95 K96 W97 Q98 M100 H104 R116 F118 R126 N128 Q129 I130 R131 Y135 Q137 H138 Q140 R142 R145 Q182 S183 I184 Y185 P186 K194 K196

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation
GO:0030154	cell differentiation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6p5k, PDBe:6p5k, PDBj:6p5k
PDBsum	6p5k
PubMed	31609474
UniProt	G1SS70\|RS3A_RABIT Small ribosomal subunit protein eS1 (Gene Name=RPS3A)

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