Structure of PDB 6opm Chain C

Receptor sequence
>6opmC (length=359) Species: 2209 (Methanosarcina mazei) [Search protein sequence]
MKLLLLNGHGINMHVDGAKLHIKDGRFSTTEEPQEYVFSPKRIDIDGIII
YGKSGNLTLEAIRWLIKHNVQVSILDWNGKLLTTMLPPESTNLRTKFAQY
HAFEDKEARLEIAKKFIEAKFYKSKAVLDFLSQRYPEINFDILDGLTKLK
DVKSTREILGVEGTLAGKYWIEFSKAVPKEYDFSNRIDQFRRAMGSGDMI
NTMLNYGYSLLEAECLKAINSVGLDTHVGFLHEMAPSKNSLAYDLQEPFR
FIVDLAVISLIESGAMESKDFIRTENYNLRLKPTGARKIVNEFSNTLNKK
VSYQGKESTWSYVIFLKVRELAHYLTSKKEKLDFTKPEYEIERIDSYDIR
QKILSISYV
3D structure
PDB6opm Casposase structure and the mechanistic link between DNA transposition and spacer acquisition by CRISPR-Cas.
ChainC
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C K306 S308 T309 Y312 K306 S308 T309 Y312
BS02 dna C S90 T91 H323 S90 T91 H323
BS03 CA C M1 D46 M1 D46
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0043571 maintenance of CRISPR repeat elements
GO:0051607 defense response to virus

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Molecular Function
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Biological Process
External links
PDB RCSB:6opm, PDBe:6opm, PDBj:6opm
PDBsum6opm
PubMed31913120
UniProtA0A0F8IEL4

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