Structure of PDB 6myd Chain C

Receptor sequence
>6mydC (length=151) Species: 7955 (Danio rerio) [Search protein sequence]
QYQGIYVWRVENFSHHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQT
PSAPRCSNFISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQVEGQHHIEVM
ETKPDLQAFQRPTVMRNPKGFGYVTFLHLQALRQRGFVKEDVLLVRCEVT
P
3D structure
PDB6myd Modular Architecture of the STING C-Terminal Tail Allows Interferon and NF-kappa B Signaling Adaptation.
ChainC
Resolution1.399 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C R416 F434 Q478 A479 R487 P489 K490 G491 F492 G493 Y494 V495 T496 R45 F63 Q107 A108 R116 P118 K119 G120 F121 G122 Y123 V124 T125
Gene Ontology
Molecular Function
GO:0004842 ubiquitin-protein transferase activity
GO:0005164 tumor necrosis factor receptor binding
Biological Process
GO:0016567 protein ubiquitination
GO:0043122 regulation of canonical NF-kappaB signal transduction

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6myd, PDBe:6myd, PDBj:6myd
PDBsum6myd
PubMed31018131
UniProtQ6IWL4|TRAF6_DANRE TNF receptor-associated factor 6 (Gene Name=traf6)

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