Structure of PDB 6kmf Chain C

Receptor sequence

>6kmfC (length=337) Species: 431947 (Porphyromonas gingivalis ATCC 33277) [Search protein sequence]

AFGVGDDESKVAKLTVMVYNGEQQEAIKSAENATKVEDIKCSAGQRTLVV
MANTGAMELVGKTLAEVKALTTELTAENQEAAGLIMTAEPKTIVLKAGKN
YIGYSGTGEGNHIENDPLKIKRVHARMAFTEIKVQMSAAYDNIYTFVPEK
IYGLIAKKQSNLFGATLVNADANYLTGSLTTFNGAYTPANYANVPWLSRN
YVAPAADAPQGFYVLENDYSANGGTIHPTILCVYGKLQKNGADLAGADLA
AAQAANWVDAEGKTYYPVLVNFNSNNYTYDSNYTPKNKIERNHKYDIKLT
ITGPGTNNPENPITESAHLNVQCTVAEWVLVGQNATW

3D structure

PDB

6kmf Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	C	L60 T80 V82 E83 I85 K86 C87 A143 N146 Y147 I148 Y150 L164 K165 I166 R168 P313 N322 Y323 T324 Y325 D326 Y329 N338 H339 K340 Y341 D342 I343 K344 T346 T348 P350 I359	L14 T34 V36 E37 I39 K40 C41 A97 N100 Y101 I102 Y104 L118 K119 I120 R122 P267 N276 Y277 T278 Y279 D280 Y283 N292 H293 K294 Y295 D296 I297 K298 T300 T302 P304 I313

Gene Ontology

	Molecular Function
GO:0005198	structural molecule activity

	Biological Process
GO:0007155	cell adhesion

	Cellular Component
GO:0009279	cell outer membrane
GO:0009289	pilus

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6kmf, PDBe:6kmf, PDBj:6kmf
PDBsum	6kmf
PubMed	32284566
UniProt	B2RH54\|FIMA1_PORG3 Major fimbrium subunit FimA type-1 (Gene Name=fimA)

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