Structure of PDB 6jlu Chain C

Receptor sequence
>6jluC (length=450) [Search protein sequence]
IAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMVLFEV
SHFVPEKPTYEQGFILIQHLATLGYGIGPGGEITSTVPYFAVGVIHLISS
AILGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLCLLGLGS
FLLVIKAMYLGGVYDTWAPGGGDVRYITTPTLNPIVIFGYVFRSPFGGDG
WVVSVNNMEDVIGGHIWVGILCIVGGIWHIFTKPFAWARRAFVWSGEAYL
SYSLAAISLMGFTAALYSWYNNTAYPSELYGPTGPEASQAQAFTFLVRDQ
RLGANVSSAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGP
NGLDINKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSP
RSWLCCSHFFLAFFFLVGHWWHAGRARAAAAGFEKGIDRDFEPVLSMTPL
3D structure
PDB6jlu The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
ChainC
Resolution3.02 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 OEX C E354 R357 E332 R335
BS02 CLA C L168 G171 S172 L175 W223 H237 V240 M282 T285 Y289 A296 Y297 L146 G149 S150 L153 W201 H215 V218 M260 T263 Y267 A274 Y275
BS03 CLA C W63 L88 H91 Y97 L174 I279 M282 A286 Y297 H430 L433 A434 F437 W41 L66 H69 Y75 L152 I257 M260 A264 Y275 H408 L411 A412 F415
BS04 CLA C V61 A64 L88 L92 V114 H118 V39 A42 L66 L70 V92 H96
BS05 CLA C W63 M67 F70 G85 W425 S429 F432 W41 M45 F48 G63 W403 S407 F410
BS06 CLA C F264 Y274 A277 F284 H441 W442 A445 R449 F242 Y252 A255 F262 H419 W420 A423 R427
BS07 CLA C L165 L243 G247 W250 H251 P256 F257 W259 F264 L143 L221 G225 W228 H229 P234 F235 W237 F242
BS08 CLA C M157 L161 H164 L168 F264 W266 Y271 Y274 S275 A278 M282 M135 L139 H142 L146 F242 W244 Y249 Y252 S253 A256 M260
BS09 CLA C W36 S37 N39 A40 L272 L276 F436 F437 G440 W443 H444 W14 S15 N17 A18 L250 L254 F414 F415 G418 W421 H422
BS10 CLA C N39 L42 I43 L49 A52 H53 H56 M60 W151 G268 Y271 L272 S275 N17 L20 I21 L27 A30 H31 H34 M38 W129 G246 Y249 L250 S253
BS11 CLA C N39 H56 L59 M60 W63 F437 N17 H34 L37 M38 W41 F415
BS12 CLA C R26 W35 G38 N39 R41 L42 K48 A52 I130 S133 L134 R4 W13 G16 N17 R19 L20 K26 A30 I108 S111 L112
BS13 CLA C H53 F147 I160 I163 H164 L167 H31 F125 I138 I141 H142 L145
BS14 CLA C V54 I124 G128 Y131 H132 F144 F147 V32 I102 G106 Y109 H110 F122 F125
BS15 CLA C F210 F214 W259 F188 F192 W237
BS16 CLA C V109 A113 V87 A91
BS17 CLA C I249 F253 I227 F231
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 16 22:31:52 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6jlu', asym_id = 'C', title = 'The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6jlu', asym_id='C', title='The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009521,0009523,0009767,0009772,0015979,0016020,0016168,0019684,0045156', uniprot = '', pdbid = '6jlu', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009521,0009523,0009767,0009772,0015979,0016020,0016168,0019684,0045156', uniprot='', pdbid='6jlu', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>