Structure of PDB 6jl2 Chain C

Receptor sequence
>6jl2C (length=386) Species: 672 (Vibrio vulnificus) [Search protein sequence]
SPEAITSAQVFSTQSKETYTYVRCWYRTGNSHDESATDWEWAENPDGSYF
TIDGYWWLKNMFYTNTSQNVIKQRCEETLGVTHDAADITYFAADNRWSYN
HTIWTNDPVMQADQINKIVAFGDSLSDTGNIFNAAQWRFPNPDTWFLGHF
SNGFVWTEYIAQAKKLPLYNWAVGGAAGSNQYVALTGVKDQVLSYLTYAK
MAKNYKPENTLFTLEFGLNDFMNYNREVVDVKTDFSTALIKLTDAGAKNI
MLMTLPDATKAPQFKYSTQAEIEKVRAKIVEFNEFIKAQAAFYIIQGYNI
TLYDTHGLFEQLTQNPQQHGFVNASDACLNISADYLYSHSLTNECATHSS
DKYVFWNVTHPTTAVHKYIAEKMLAPGAGMQRFNFH
3D structure
PDB6jl2 Structural analysis of aVibriophospholipase reveals an unusual Ser-His-chloride catalytic triad.
ChainC
Resolution2.3 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 1PS C K87 N158 W199 L213 Y226 K59 N130 W171 L185 Y198
BS02 1PS C R124 W125 Y127 Q164 W165 R96 W97 Y99 Q136 W137
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Dec 2 08:55:36 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6jl2', asym_id = 'C', title = 'Structural analysis of aVibriophospholipase reveals an unusual Ser-His-chloride catalytic triad.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6jl2', asym_id='C', title='Structural analysis of aVibriophospholipase reveals an unusual Ser-His-chloride catalytic triad.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0006629,0016298,0016788', uniprot = '', pdbid = '6jl2', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006629,0016298,0016788', uniprot='', pdbid='6jl2', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>