Structure of PDB 6hd7 Chain C

Receptor sequence

>6hd7C (length=105) Species: 4932 (Saccharomyces cerevisiae)

VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFG
GQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKG
QALQF

3D structure

• PDB: 6hd7 Ribosome-NatA architecture reveals that rRNA expansion segments coordinate N-terminal acetylation.
• Chain: C
• Resolution: 3.4 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	C	V2 N3 P5 R8 K9 T10 Y11 K13 K15 R18 K19 H20 Y28 K32 F36 Q38 G39 R41 R42 R45 K46 S48 G49 F50 G51 G52 Q53 T54 P56 F58 K60 A62 K63 T65 K67 R71 R80 Q82 K86 K89 K97 K98 K100	V1 N2 P4 R7 K8 T9 Y10 K12 K14 R17 K18 H19 Y27 K31 F35 Q37 G38 R40 R41 R44 K45 S47 G48 F49 G50 G51 Q52 T53 P55 F57 K59 A61 K62 T64 K66 R70 R79 Q81 K85 K88 K96 K97 K99

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0008270 zinc ion binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation
• GO:0046677 response to antibiotic
• GO:0046898 response to cycloheximide

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:0044391 ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6hd7, PDBe:6hd7, PDBj:6hd7
• PDBsum: 6hd7
• PubMed: 30559462
• UniProt: P0CX27|RL44A_YEAST Large ribosomal subunit protein eL42A (Gene Name=RPL42A)