Structure of PDB 6f2f Chain C

Receptor sequence
>6f2fC (length=166) Species: 53953 (Pyrococcus horikoshii) [Search protein sequence]
MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKV
DLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASIC
HGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRV
PADLYAWMREFVKLLK
3D structure
PDB6f2f Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
ChainC
Resolution1.65 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G70 R71 E74 C100 H101 Y120
Catalytic site (residue number reindexed from 1) G70 R71 E74 C100 H101 Y120
Enzyme Commision number 3.4.22.-
3.5.1.124: protein deglycase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 7MT C N9 F35 E36 R75 N9 F35 E36 R75
BS02 2HA C G131 V132 G131 V132
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
GO:0036524 protein deglycase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6f2f, PDBe:6f2f, PDBj:6f2f
PDBsum6f2f
PubMed29806881
UniProtO59413|DEGLY_PYRHO Deglycase PH1704 (Gene Name=PH1704)

[Back to BioLiP]