Structure of PDB 6bjy Chain C

Receptor sequence
>6bjyC (length=413) Species: 11285 (Vesicular stomatitis Indiana virus strain San Juan) [Search protein sequence]
SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDL
RGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDT
IGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPE
YRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMF
FHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILN
REVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWG
QLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVG
DNKYTPTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLRE
KTIGKYAKSEFDK
3D structure
PDB6bjy A Polyamide Inhibits Replication of Vesicular Stomatitis Virus by Targeting RNA in the Nucleocapsid.
ChainC
Resolution3.46 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C R143 R146 M149 E151 K155 Y215 D224 S285 K286 S287 S290 S291 V292 R312 N315 R317 R408 R142 R145 M148 E150 K154 Y214 D223 S284 K285 S286 S289 S290 V291 R311 N314 R316 R399
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0019083 viral transcription
GO:0039703 RNA replication
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6bjy, PDBe:6bjy, PDBj:6bjy
PDBsum6bjy
PubMed29437970
UniProtP03521|NCAP_VSIVA Nucleoprotein (Gene Name=N)

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