Structure of PDB 6bed Chain C

Receptor sequence
>6bedC (length=530) Species: 10254 (Vaccinia virus WR) [Search protein sequence]
IKRSNVFAVDSQIPTLYMPQYISLSGVMTNDDNQAIASFEIRDQYITALN
HLVLSLELPEVKGMGRFGYVPYVGYKCINHVSISSCNGVIWEIEGEELYN
NCINNTIALKHSGYSSELNDISIGLTPNDTIKEPSTVYVYIKTPFDVEDT
FSSLKLSDSKITVTVTFNPVSDIVIRDSSFDFETFNKEFVYVPELSFIGY
MVKNVQIKPSFIEKPRRVIGQINQPTATVTEVHAATSLSVYTKPYYGNTD
NKFISYPGYSQDEKDYIDAYVSRLLDDLVIVSDGPPTGYPESAEIVEVPE
DGIVSIQDADVYVKIDNVPDNMSVYLHTNLLMFGTRKNSFIYNISKKFSA
ITGTYSDATKRTIFAHISHSINIIDTSIPVSLWTSQRNVYNGDNRSAESK
AKDLFINDPFIKGIDFKNKTDIISRLEVRFGNDVLYSENGPISRIYNELL
TKSNNGTRTLTFNFTPKIFFRPTTITANVSRGKDKLSVRVVYSTMDVNHP
IYYVQKQLVVVCNDLYKVSYDQGVSITKIM
3D structure
PDB6bed Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
ChainC
Resolution2.75 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RFP C Q27 F168 F486 Q12 F151 F469 PDBbind-CN: -logKd/Ki=4.72,Kd=19uM
Gene Ontology
Molecular Function
GO:0042802 identical protein binding
Biological Process
GO:0046677 response to antibiotic
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6bed, PDBe:6bed, PDBj:6bed
PDBsum6bed
PubMed30068608
UniProtP68440|PG125_VACCW Scaffold protein OPG125 (Gene Name=OPG125)

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