Structure of PDB 6ab6 Chain C

Receptor sequence
>6ab6C (length=337) Species: 430911 (Penaeus vannamei nodavirus) [Search protein sequence]
RRRVVINQSNQSMPVTSNGAPLQALTSYSRPNVNKISRLGPDSDFLTSVV
AKASTSIVTPADRILVKQPLSASSFPGTRITGLSSYWERYKWLSAVARYV
PAVPNTVACQFVMYIDTDPLDDPSNISDDNQIVRQAVSQAGSNQFNFNTS
KTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQVTDLINFNGELITQD
LTCGSLFLDWLVNFSIPQINPTSLTDVRVDKAVNFIKPEVSGVAEIQTVT
GLSPSTSYLLTPAFLEQNFQSEAGIYILSATPVEGEGTISINMDPTVTTV
SGFIKVKTDTFGTFDLSVVLTTASKKQTTGFNIIAAT
3D structure
PDB6ab6 The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
ChainC
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA C D146 D148 D151 D116 D118 D121
BS02 CA C E118 Q248 E88 Q218
BS03 CA C E118 N250 E88 N220
BS04 CA C D148 D151 D118 D121
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
GO:0046872 metal ion binding
Cellular Component
GO:0019028 viral capsid
GO:0044423 virion component

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Molecular Function
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Cellular Component
External links
PDB RCSB:6ab6, PDBe:6ab6, PDBj:6ab6
PDBsum6ab6
PubMed30820467
UniProtA5H7Q8

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