Structure of PDB 6a6j Chain C

Receptor sequence
>6a6jC (length=90) Species: 7955 (Danio rerio) [Search protein sequence]
KVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS
VGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADR
3D structure
PDB6a6j RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay.
ChainC
Resolution2.255 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C W45 N47 Y52 F54 D63 F65 H67 G99 E101 W13 N15 Y20 F22 D31 F33 H35 G67 E69 PDBbind-CN: Kd=223nM
BS02 ZN C E97 E101 E65 E69
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:6a6j, PDBe:6a6j, PDBj:6a6j
PDBsum6a6j
PubMed31399345
UniProtP67809|YBOX1_HUMAN Y-box-binding protein 1 (Gene Name=YBX1)

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