Structure of PDB 5zqx Chain C

Receptor sequence
>5zqxC (length=535) Species: 1408 (Bacillus pumilus) [Search protein sequence]
MKITNPVLKGFNPDPSICRAGEDYYMAVSTFEWFPGVQIYHSKDLIHWRL
AARPLQKTSQLDMKGNPDSGGVWAPCLSYADGQFWLIYSDIKVVDGPFKD
GHNYLVTADAVDGEWSDPVRLNSSGFDPSLFHDPSGKKYVLNMLWDHREK
HHSFAGIALQEYSVSEKKLVGERKVIFKGTPIKLTQAPHLYYINDVYYLL
TAEGGTRYEHAATIARSSRIDGPYEVHPDNPILTAFHAPSHPLQKCGHAS
IVQTHTNEWYLAHLTGRPIHSSKESIFQQRGWCPLGRETAIQKLEWKDGW
PYVVGGKEGLLEVEAPAMSVKEFSPTYHIVDEFKDSSLNRHFQTLRIPFT
DQIGSVTENPHHLRLYGQESLTSKFTQAFVARRWQSFYFEAETAVSFFPK
NFQQAAGLVNYYNTENWTALQVTYDDALGRILELSVCENLAFSQPLIKKI
IIPDEIPYVYLKVTVQRETYTYSYSFDQQEWEKIDVPLESTHLSDDFIRG
GGFFTGAFVGMQCQDTSGERLPADFKYFRYEETTE
3D structure
PDB5zqx Structure-based protein engineering of bacterial beta-xylosidase to increase the production yield of xylobiose from xylose
ChainC
Resolution2.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.37: xylan 1,4-beta-xylosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 XYP C Q186 G205 T206 F504 Q186 G205 T206 F504
BS02 XYP C D14 F31 W73 Q186 R287 F504 D14 F31 W73 Q186 R287 F504
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0009044 xylan 1,4-beta-xylosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0045493 xylan catabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5zqx, PDBe:5zqx, PDBj:5zqx
PDBsum5zqx
PubMed29752942
UniProtP07129|XYNB_BACPU Beta-xylosidase (Gene Name=xynB)

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