Structure of PDB 5zl6 Chain C

Receptor sequence
>5zl6C (length=372) Species: 1123962 (Leuconostoc mesenteroides subsp. sake) [Search protein sequence]
NYNAPHRHAVIELSQSAVVHNLKVIKENTHAKEIMAVLKANAFSHGLPEM
ASLSITAGATRFGMAMLDEALTLRDLGYIQPIDVLGLTDPRYARLAAERN
ITLAFSTKESIKAAAEQLAGTGLTLKVSLPVDTGLNRIGFKSREDLVAAI
QEVSAQDTLIFQSMWTHFATADTPNVDYVDFQISEWQRLTHDLPVEPNEK
HFANTGIATWYPEKINTDIVRLGIGLFGINGSVPIMSMPFELIPALSLKA
KVVNSKPLKKGDAVGYGAEYHAPNDGYLITIPIGHSDGYPFNGSGMRALV
ADGQIGHIVGGVAMDQSMIFVTNPVAVGTTVTLIGRVGDQSITMQDLAEH
TQSSIVALMNDFAPRLQRIIVS
3D structure
PDB5zl6 The first identification and characterization of a histidine-specific amino acid racemase, histidine racemase from a lactic acid bacterium, Leuconostoc mesenteroides subsp. sake NBRC 102480.
ChainC
Resolution2.1 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K40 R138 H168 R222 Y267 A314 D316
Catalytic site (residue number reindexed from 1) K39 R137 H167 R221 Y266 A313 D315
Enzyme Commision number 5.1.1.1: alanine racemase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP C K40 R138 W166 H168 N205 T206 R222 G224 I225 K39 R137 W165 H167 N204 T205 R221 G223 I224
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008784 alanine racemase activity
GO:0016853 isomerase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0006522 alanine metabolic process
GO:0009252 peptidoglycan biosynthetic process
GO:0030632 D-alanine biosynthetic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5zl6, PDBe:5zl6, PDBj:5zl6
PDBsum5zl6
PubMed30377839
UniProtQ03Z32

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