Structure of PDB 5yj7 Chain C

Receptor sequence
>5yj7C (length=490) Species: 3187 (Nannochloris) [Search protein sequence]
DVTCWKYAIPGEPGGELTAEEVFASKDTAFPEGFLWGAATAAYQIEGAAA
EDGRGPSMWDTFSKIPGKIDNGDTGDVACDHYHRYKEDVKLMKGMGLKSY
RFSVSWSRVLPEGTGAINPKGMEFYQNLTNELIANGIVPTVTLYHWDLPE
ALSKNGGWLNEDTAVAFGQYADVMFQALGDRVKLWFTLNEPWTTAIAGYG
QGGHAPGLKNMAENPYMAGHNQLLGHAAAVKVYREKYQEKQGGKIGAVLS
TEWKEPLCHTQEDKDAAERSLIWYLAWFADPIYKGDYPEEMKERVGDRMP
AFTEQQKQDLKGSADFFGINHYATNLLQGPTEKIGAENYFSDLNGWIMMD
PRWAVGDASWLSVVPWGMRRLLRWIKHRYDDPVVYVTENGLSVPNESAMT
PEAALNDKMRVDYLQGYVAEMWKAINYDKVKVAGYYHWSLLDNFEWSDGY
KVRFGLVQVDYKTQKRTLKESAKVYKDMIAKYSGDTAPPD
3D structure
PDB5yj7 Structural insight into a GH1 beta-glucosidase from the oleaginous microalga, Nannochloropsis oceanica.
ChainC
Resolution1.61 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA C D505 T506 P508 D510 D485 T486 P488 D490
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008422 beta-glucosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0030245 cellulose catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5yj7, PDBe:5yj7, PDBj:5yj7
PDBsum5yj7
PubMed33347927
UniProtA0A452CSM4

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