Structure of PDB 5yd5 Chain C

Receptor sequence
>5yd5C (length=240) Species: 10090 (Mus musculus) [Search protein sequence]
EVQLQQSGAELVRPGTSVKMSCKAAGYTFTKYWIGWVKQRPGHGLEWIGD
IHPGSFYSNYNEKFKGKATLTADTSSSTAYMQLSSLTSEDSAIYYCARDY
YTNYGDWGQGTSVTVSSAGGGGSGGGGSDIVMTQAAPSVSVTPGESVSIS
CRSSKSLLHRNGNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGS
GTAFTLRISRVEAEDVGVYYCMQHLEYPYTFGSGTKLELK
3D structure
PDB5yd5 Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody
ChainC
Resolution1.96 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C S210 T217 R219 S198 T205 R207
BS02 peptide C Y34 W35 D52 S57 Y59 Y103 H171 Y177 H236 E238 Y239 Y241 Y32 W33 D50 S55 Y57 Y101 H159 Y165 H224 E226 Y227 Y229
Gene Ontology
Molecular Function
GO:0003823 antigen binding
Biological Process
GO:0002250 adaptive immune response
GO:0006955 immune response
Cellular Component
GO:0005615 extracellular space
GO:0019814 immunoglobulin complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5yd5, PDBe:5yd5, PDBj:5yd5
PDBsum5yd5
PubMed29924367
UniProtP01630|KV2A6_MOUSE Ig kappa chain V-II region 7S34.1

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