Structure of PDB 5y9e Chain C

Receptor sequence
>5y9eC (length=415) Species: 10598 (human papillomavirus 58) [Search protein sequence]
KVVSTDEYVSRTSIYYYAGSSRLLAVGNPYFSIKSPNNNKKVLVPKVSGL
QYRVFRVRLPDPNKFGFPDTSFYNPDTQRLVWACVGLEIGRGQPLGVGVS
GHPYLNKFDDTETSNRYPAQPGSDNRECLSMDYKQTQLCLIGCKPPTGEH
WGKGVASTDCPPLELFNSIIEDGDMVDTGFGCMDFGTLQANKSDVPIDIC
NSTCKYPDYLKMASEPYGDSLFFFLRREQMFVRHFFNRAGKLGEAVPDDL
YIKGSGNTAVIQSSAFFPTPSGSIVTSESQLFNKPYWLQRAQGHNNGICW
GNQLFVTVVDTTRSTNMTLCTEVTKEGTYKNDNFKEYVRHVEEYDLQFVF
QLCKITLTAEIMTYIHTMDSNILEDWQFEDPLNKYTFWEVNLKEKFSADL
DQFPLGRKFLLQSGL
3D structure
PDB5y9e Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus.
ChainC
Resolution2.042 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG C D335 R338 S339 E367 D310 R313 S314 E342
BS02 MG C Y231 R251 Y206 R226
BS03 MG C G206 C207 G181 C182
BS04 MG C E107 N308 K466 E88 N283 K408
BS05 MG C A264 G265 A239 G240
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0019062 virion attachment to host cell
GO:0046718 symbiont entry into host cell
GO:0075509 endocytosis involved in viral entry into host cell
Cellular Component
GO:0019028 viral capsid
GO:0039620 T=7 icosahedral viral capsid
GO:0042025 host cell nucleus

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Molecular Function
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Cellular Component
External links
PDB RCSB:5y9e, PDBe:5y9e, PDBj:5y9e
PDBsum5y9e
PubMed28951471
UniProtP26535|VL1_HPV58 Major capsid protein L1 (Gene Name=L1)

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