Structure of PDB 5y5p Chain C

Receptor sequence
>5y5pC (length=149) Species: 654913 (Shrimp white spot syndrome virus (isolate Tongan)) [Search protein sequence]
DSSASVVFMRFAPPGEETALPPRRATPGSVAYDLFPSEEMDIEPMGLAKI
STGYGIDKFPDGCYGQIVSRSGMTWKNNTSVPTGTIDVDYRGELKVILRN
HSAEKSVPIRKGTSIAQLIFLRYCDVEEEQIVYINETTGERTIIDSSSK
3D structure
PDB5y5p The dUTPase of white spot syndrome virus assembles its active sites in a noncanonical manner.
ChainC
Resolution2.03 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.1.23: dUTP diphosphatase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 POP C R71 S72 G73 R70 S71 G72
BS02 DUR C T84 G85 I87 D88 Y91 K96 T83 G84 I86 D87 Y90 K95
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004170 dUTP diphosphatase activity
Biological Process
GO:0006226 dUMP biosynthetic process
GO:0046081 dUTP catabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5y5p, PDBe:5y5p, PDBj:5y5p
PDBsum5y5p
PubMed29187596
UniProtQ77J78

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