Structure of PDB 5xvo Chain C

Receptor sequence
>5xvoC (length=286) Species: 749498 (Enterococcus faecalis TX0027) [Search protein sequence]
MGWRTVVVNKHSKLSYKNNHLVFKAIDHQELIHLSEIDVLLLETTDISLT
TMLLKRLIDEKILVLFCDDKRLPIGKILPFYGRHDSSLQLTRQLAWTEER
KGQVWTAIIAQKITNQSLHLAQRDYGQKAAALLAMRAELRLFDPANREGH
AARSYFNTLFGNDFTREQENDINAGLNYGYTLLLSIFARELVQTGCFTQL
GLKHQFNDFNLASDLMEPFRPLVDQIIYENRKEAFPIMKRKLFALFMNTY
MYKKKQMFLTNIATDYTKHVVKVLNQEEEGVPEFGI
3D structure
PDB5xvo How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
ChainC
Resolution3.1 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C K70 R71 Y178 T181 K70 R71 Y178 T181
BS02 dna C H11 K13 K24 T45 D46 S48 H11 K13 K24 T45 D46 S48
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 03:33:41 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5xvo', asym_id = 'C', title = 'How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5xvo', asym_id='C', title='How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003676,0004519,0004520,0043571,0046872,0051607', uniprot = '', pdbid = '5xvo', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0004519,0004520,0043571,0046872,0051607', uniprot='', pdbid='5xvo', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>