Structure of PDB 5xm9 Chain C

Receptor sequence
>5xm9C (length=174) Species: 10498 (African swine fever virus BA71V) [Search protein sequence]
MLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLNDV
NLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQLD
LFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLVP
LKITTEKELIKELGFTYRIPKKRL
3D structure
PDB5xm9 Crystal structure of an RNA-cleaving DNAzyme.
ChainC
Resolution3.053 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C I169 K172 I169 K172
BS02 dna C V80 C81 G82 R84 I124 R127 K136 L137 Y140 V80 C81 G82 R84 I124 R127 K136 L137 Y140
BS03 dna C D49 N51 K85 H115 F116 G118 V120 D49 N51 K85 H115 F116 G118 V120
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5xm9, PDBe:5xm9, PDBj:5xm9
PDBsum5xm9
PubMed29222499
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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