Structure of PDB 5vz0 Chain C

Receptor sequence
>5vz0C (length=1074) Species: 1358 (Lactococcus lactis) [Search protein sequence]
VPRGSHMKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKA
DESYLIGQGKKPIDAYLDIDDIIRVALESGADAIHPGYGLLSENLEFATK
VRAAGLVFVGPELHHLDIFGDKIKAKAAADEAKVPGIPIENPKHIEVQIL
GDRHGNIIHLHERDCSVQRRNQKVIEIAPAVGLSPDFRNEICEAAVKLCK
NVGYVNAGTVEFLVKDDKFYFIEVNPRVQVEHTITELITGVDIVQAQILI
AQGKDLHREIGLPAQSEIPLLGSAIQCRITTEDPQNGFLPDTGKIDTYRS
PGGFGIRLDVGNAYAGYEVTPYFDSLLVKVCTFANEFSDSVRKMDRVLHE
FRIRGVKTNIPFLINVIANENFTSGQATTTFIDNTPSLFNFPRLRDRGTK
TLHYLSMITVNGFPGIENTEKRHFEEPRQPLLNLEKKKTAKNILDEQGAD
AVVDYVKNTKEVLLTDTTLRDAHQSLLATRLRLQDMKGIAQAIDQGLPEL
FSAEMWGGATFDVAYRFLNESPWYRLRKLRKLMPNTMFQMLFRGSNAVGY
QNYPDNVIEEFIRVAAHEGIDVFRIFDSLNWLPQMEKSIQAVRDNGKIAE
ATICYTGDILDPSRPKYNIQYYKDLAKELEATGAHILAVKDMAGLLKPQA
AYRLISELKDTVDLPIHLHTHDTSGNGIITYSAATQAGVDIIDVATASLA
GGTSQPSMQSIYYALEHGPRHASINVKNAEQIDHYWEDVRKYYAPFEAGI
TSPQTEVYMHEMPGGQYTNLKSQAAAVGLGHRFDEIKQMYRKVNMMFGDI
IKVTPSSKVVGDMALFMIQNDLTEEDVYARGNELNFPESVVSFFRGDLGQ
PVGGFPEKLQKIIVKDKAVITDRPGLHAEKVDFETVKADLEQKIGYEPGD
HEVISYIMYPQVFLDYQKMQREFGAVTLLDTPTFLHGMRLNEKIEVQIEK
GKTLSIRLDEIGEPDLAGNRVLFFNLNGQRREVVINDQSVQAQVVAKRKA
ETGNPNQIGATMPGSVLEILVKAGDKVQKGQALMVTEAMKMETTIEAPFD
GEIVDLHVVKGEAIQTQDLLIEIN
3D structure
PDB5vz0 Structural and functional studies of pyruvate carboxylase regulation by cyclic di-AMP in lactic acid bacteria.
ChainC
Resolution2.0 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN C D534 H732 H734 D471 H669 H671
BS02 2BA C Q712 Y715 S745 A746 Q749 Q649 Y652 S682 A683 Q686
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Nov 25 11:38:36 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5vz0', asym_id = 'C', title = 'Structural and functional studies of pyruvate ca...ulation by cyclic di-AMP in lactic acid bacteria.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5vz0', asym_id='C', title='Structural and functional studies of pyruvate ca...ulation by cyclic di-AMP in lactic acid bacteria.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003824,0004736,0005524,0006090,0006094,0046872', uniprot = '', pdbid = '5vz0', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004736,0005524,0006090,0006094,0046872', uniprot='', pdbid='5vz0', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>