Structure of PDB 5vyz Chain C

Receptor sequence
>5vyzC (length=1083) Species: 1358 (Lactococcus lactis) [Search protein sequence]
GLVPRGSHMKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRF
KADESYLIGQGKKPIDAYLDIDDIIRVALESGADAIHPGYGLLSENLEFA
TKVRAAGLVFVGPELHHLDIFGDKIKAKAAADEAKVPGIPGTYVEKYIEN
PKHIEVQILGDRHGNIIHLHERDCSVQRRNQKVIEIAPAVGLSPDFRNEI
CEAAVKLCKNVGYVNAGTVEFLVKDDKFYFIEVNPRVQVEHTITELITGV
DIVQAQILIAQGKDLHREIGLPAQSEIPLLGSAIQCRITTEDPQNGFLPD
TGKIDTYRSPGGFGIRLDVGNAYAGYEVTPYFDSLLVKVCTFANEFSDSV
RKMDRVLHEFRIRGVKTNIPFLINVIANENFTSGQATTTFIDNTPSLFNF
PRLRDRGTKTLHYLSMITVNGFPGIENTEKRHFEEPRQPLLNLEKKKTAK
NILDEQGADAVVDYVKNTKEVLLTDTTLRDAHQSLLATRLRLQDMKGIAQ
AIDQGLPELFSAEMWGGATFDVAYRFLNESPWYRLRKLRKLMPNTMFQML
FRGSNAVGYQNYPDNVIEEFIRVAAHEGIDVFRIFDSLNWLPQMEKSIQA
VRDNGKIAEATICYTGDILDPSRPKYNIQYYKDLAKELEATGAHILAVKD
MAGLLKPQAAYRLISELKDTVDLPIHLHTHDTSGNGIITYSGATQAGVDI
IDVATASLAGGTSQPSMQSIYYALEHGPRHASINVKNAEQIDHYWEDVRK
YYAPFEAGITSPQTEVYMHEMPGGQYTNLKSQAAAVGLGHRFDEIKQMYR
KVNMMFGDIIKVTPSSKVVGDMALFMIQNDLTEEDVYARGNELNFPESVV
SFFRGDLGQPVGGFPEKLQKIIVKDKAVITDRPGLHAEKVDFETVKADLE
QKIGYEPGDHEVISYIMYPQVFLDYQKMQREFGAVTLLDTPTFLHGMRLN
EKIEVQIEKGKTLSIRLDEIGEPDLAGNRVLFFNLNGQRREVVINDQSVQ
AQVVAKRKAETGNPNQIGATMPGSVLEILVKAGDKVQKGQALMVTEAMKM
ETTIEAPFDGEIVDLHVVKGEAIQTQDLLIEIN
3D structure
PDB5vyz Structural and functional studies of pyruvate carboxylase regulation by cyclic di-AMP in lactic acid bacteria.
ChainC
Resolution2.3 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN C D534 K703 H732 H734 D480 K649 H678 H680
BS02 ADP C Y201 H207 Q231 L276 E286 T442 Y147 H153 Q177 L222 E232 T388
BS03 MG C E274 E286 E220 E232
BS04 2BA C P711 Y715 S745 Q749 P657 Y661 S691 Q695
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Nov 24 12:46:01 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5vyz', asym_id = 'C', title = 'Structural and functional studies of pyruvate ca...ulation by cyclic di-AMP in lactic acid bacteria.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5vyz', asym_id='C', title='Structural and functional studies of pyruvate ca...ulation by cyclic di-AMP in lactic acid bacteria.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003824,0004736,0005524,0006090,0006094,0046872', uniprot = '', pdbid = '5vyz', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004736,0005524,0006090,0006094,0046872', uniprot='', pdbid='5vyz', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>