Structure of PDB 5vf4 Chain C

Receptor sequence

>5vf4C (length=380) Species: 498848 (Thermus aquaticus Y51MC23) [Search protein sequence]

IFSVKDSLRQAVEAASGGLCTVMYTKKGQPVFLRRIPRFNLEDIDPSLGT
GPHPAFVVGGEVKSEIWIGQFPGIVSNGELISVPGVDPANTINFDEALGY
ARASGPGFHLMTNAEWAAVALLTWKSRGAGDDPVRGNTQWGRSHEAQWEA
GTRQSGDAPGEDTGAQGRSGRTLTGSGPATWRHDGTPAGIADLVGNVWEW
VAGLRLVGGEIQIIPDNDAAFASTDMSASSPLWKAIRASDGALVSPGTSG
TLKYDINPNKSYSNDNTIQDLGPLTLHTTTQTPPAGWDSNTYQDYASALY
KDLVVGTGITVPNLLKVLMLAPHTTSITKGRLYARPYGERLPIRGGDWGN
GGVAGLAALYLLNPRGSRRWGVGARPAFVL

3D structure

PDB

5vf4 Crystal structure of a Thermus aquaticus diversity-generating retroelement variable protein.

Chain

Resolution

2.81 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CA	C	S264 D266 T268 Q270 D295	S263 D265 T267 Q269 D294
BS02	CA	C	D193 L194 G196 V198 E200	D192 L193 G195 V197 E199
BS03	CA	C	R370 G372	R369 G371

External links

PDB	RCSB:5vf4, PDBe:5vf4, PDBj:5vf4
PDBsum	5vf4
PubMed	30629599

[Back to BioLiP]