Structure of PDB 5nw1 Chain C

Receptor sequence

>5nw1C (length=141) Species: 9606 (Homo sapiens) [Search protein sequence]

VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHS
YRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKER
CLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLT

3D structure

PDB

5nw1 Group-Based Optimization of Potent and Cell-Active Inhibitors of the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase: Structure-Activity Relationships Leading to the Chemical Probe (2S,4R)-1-((S)-2-(1-Cyanocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (VH298).

Chain

Resolution

2.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	9BH	C	W88 Y98 P99 I109 H110 S111 Y112 H115 W117	W27 Y37 P38 I48 H49 S50 Y51 H54 W56	MOAD: Kd=210nM PDBbind-CN: -logKd/Ki=6.60,Kd=250nM

External links

PDB	RCSB:5nw1, PDBe:5nw1, PDBj:5nw1
PDBsum	5nw1
PubMed	28853884
UniProt	P40337\|VHL_HUMAN von Hippel-Lindau disease tumor suppressor (Gene Name=VHL)

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