Structure of PDB 5m0i Chain C

Receptor sequence
>5m0iC (length=240) Species: 285006 (Saccharomyces cerevisiae RM11-1a) [Search protein sequence]
LGSDIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFER
TTLIKFVKKLRFYNDSVLSYNASEFINEGKDPEADSFDKVILPIASMFVK
SVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFS
QWMIESLRIGSNLLDLEVVQFAIKSADEDGTNIGETDNIFLQEILPVNSE
EEFQTLSAAWHSILDGKLSALDEEFDVVATKWHDKFGKLK
3D structure
PDB5m0i Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
ChainC
Resolution2.41 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C F176 S180 E183 D184 F171 S175 E178 D179
BS02 rna C N36 K37 S40 H41 R43 R49 R52 I56 K60 R63 H238 G242 K243 L244 N34 K35 S38 H39 R41 R47 R50 I54 K58 R61 H233 G237 K238 L239
BS03 peptide C H150 I194 I199 L200 W215 I218 H145 I189 I194 L195 W210 I213
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0008289 lipid binding
GO:1990825 sequence-specific mRNA binding
Biological Process
GO:0007533 mating type switching
GO:0008298 intracellular mRNA localization
GO:0051028 mRNA transport
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005934 cellular bud tip

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5m0i, PDBe:5m0i, PDBj:5m0i
PDBsum5m0i
PubMed28092367
UniProtP36068|SHE2_YEAST SWI5-dependent HO expression protein 2 (Gene Name=SHE2)

[Back to BioLiP]