Structure of PDB 5jmv Chain C

Receptor sequence
>5jmvC (length=318) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence]
PMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYNPREAADHHAETFPKLI
KEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNH
CIAHIEIGKLTTEAEDPLTLYVSGGNTQVIAYVSKKYRVFGETLDIAVGN
CLDQFARYVNLPHPGGPYIEELARKGKKLVDLPYTVKGMDIAFSGLLTAA
MRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAAN
NRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGRWMSLD
ETKIIPNYRTDMVEVNWI
3D structure
PDB5jmv Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis.
ChainC
Resolution3.38647 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.3.1.234: N(6)-L-threonylcarbamoyladenine synthase.
2.7.11.1: non-specific serine/threonine protein kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP C K12 S129 G130 G155 D159 G172 P173 E176 G252 V253 N256 G283 D284 K13 S123 G124 G149 D153 G166 P167 E170 G246 V247 N250 G277 D278
BS02 MG C H106 H110 Y127 D284 H100 H104 Y121 D278
Gene Ontology
Biological Process
GO:0002949 tRNA threonylcarbamoyladenosine modification
Cellular Component
GO:0000408 EKC/KEOPS complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5jmv, PDBe:5jmv, PDBj:5jmv
PDBsum5jmv
PubMed27302132
UniProtQ58530|KAE1B_METJA Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein (Gene Name=MJ1130)

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