Structure of PDB 5j84 Chain C

Receptor sequence
>5j84C (length=575) Species: 395492 (Rhizobium leguminosarum bv. trifolii WSM2304) [Search protein sequence]
AEWPRKLRSQEWYGGTSRDVIYHRGWLKNQGYPHDLFDGRPVIGILNTWS
DMTPCNGHLRELAEKVKAGVWEAGGFPLEVPVFSASENTFRPTAMMYRNL
AALAVEEAIRGQPMDGCVLLVGCDKTTPSLLMGAASCDLPSIVVTGGPML
NGYFRGERVGSGTHLWKFSEMVKAGEMTQAEFLEAEASMSRSSGTCNTMG
TASTMASMAEALGMALSGNAAIPGVDSRRKVMAQLTGRRIVQMVKDDLKP
SEIMTKQAFENAIRTNAAIGGSTNAVIHLLAIAGRVGIDLSLDDWDRCGR
DVPTIVNLMPSGKYLMEEFFYAGGLPVVLKRLGEAGLLHKDALTVSGETV
WDEVKDVVNWNEDVILPAEKALTSSGGIVVLRGNLAPKGAVLKPSAASPH
LLVHKGRAVVFEDIDDYKAKINDDNLDIDENCIMVMKNCGPKGYPGMAEV
GNMGLPPKVLKKGILDMVRISDARMSGTAYGTVVLHTSPEAAVGGPLAVV
KNGDMIELDVPNRRLHLDISDEELARRLAEWQPNHDLPTSGYAFLHQQHV
EGADTGADLDFLKGCRGNAVGKDSH
3D structure
PDB5j84 The Crystal Structure of a Bacterial l-Arabinonate Dehydratase Contains a [2Fe-2S] Cluster.
ChainC
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.2.1.25: L-arabinonate dehydratase.
4.2.1.6: galactonate dehydratase.
4.2.1.67: D-fuconate dehydratase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG C E91 D128 K129 T205 E453 E87 D124 K125 T201 E449
BS02 FES C C59 N92 C127 D128 T199 C200 C55 N88 C123 D124 T195 C196
Gene Ontology
Molecular Function
GO:0008869 galactonate dehydratase activity
GO:0016829 lyase activity
GO:0016836 hydro-lyase activity
GO:0046872 metal ion binding
GO:0047818 D-fuconate dehydratase activity
GO:0050020 L-arabinonate dehydratase activity
GO:0051537 2 iron, 2 sulfur cluster binding
Biological Process
GO:0019568 arabinose catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5j84, PDBe:5j84, PDBj:5j84
PDBsum5j84
PubMed28574691
UniProtB5ZZ34|ARAD_RHILW L-arabinonate dehydratase (Gene Name=araD)

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