Structure of PDB 5ixm Chain C

Receptor sequence
>5ixmC (length=541) Species: 632 (Yersinia pestis) [Search protein sequence]
SMSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQWQN
EFRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQV
WRFNINYTRVSDPAYFTDLTSQYGSTTDGYATQIFTAGYANENWNATLSS
KQFQVFTAAGNSNAYRAQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPT
NPEASRFHIEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNP
KLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPRAQYLYVPYRNQD
DIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDARVE
RFNVSVGQIYYFSRSRTGNTENATGSLVWAGDTFWRINDQLGLKGGAQYD
TRLGSLTLGNAIMEYRKDADRMIQLNYRYASPKYIQAAVPKVYNPDYQQG
ISQVGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLG
YERKITGWNAQGQTSKYDNKIGFNITAQMLNSGILPYQSAF
3D structure
PDB5ixm Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
ChainC
Resolution2.746 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 C8E C G384 T386 G398 G399 Y402 G381 T383 G395 G396 Y399
BS02 C8E C N217 W219 N219 W221
BS03 C8E C R349 W388 R351 W385
BS04 C8E C Y289 F360 S361 Y291 F362 S363
BS05 C8E C L54 H91 F101 L56 H93 F103
BS06 C8E C V333 Y358 V335 Y360
Gene Ontology
Biological Process
GO:0061024 membrane organization
Cellular Component
GO:0019867 outer membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ixm, PDBe:5ixm, PDBj:5ixm
PDBsum5ixm
PubMed27161977
UniProtQ8ZIK3|LPTD_YERPE LPS-assembly protein LptD (Gene Name=lptD)

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