Structure of PDB 5i9g Chain C

Receptor sequence

>5i9gC (length=375) Species: 32644 (unidentified) [Search protein sequence]

LELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD
VVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAG
KLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEK
GIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDG
LCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFE
EMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYN
TLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEA
LKLFEEMVEKGIKPDELTYRRVVES

3D structure

PDB

5i9g Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.

Chain

Resolution

2.288 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	C	V52 N55 D59 K63 V87 N90 T91 D94 K98 V122 N125 T126 D129 K133 V157 N160 T161 K168 V192 N195 T196 D199 K203 V227 N230 T231 D234 K238 V262 T266 D269 K273 V297 N300 T301 D304 K308 V332 N335 T336 D339 K343 V367 N370 T371 L402	V17 N20 D24 K28 V52 N55 T56 D59 K63 V87 N90 T91 D94 K98 V122 N125 T126 K133 V157 N160 T161 D164 K168 V192 N195 T196 D199 K203 V227 T231 D234 K238 V262 N265 T266 D269 K273 V297 N300 T301 D304 K308 V332 N335 T336 L367

External links

PDB	RCSB:5i9g, PDBe:5i9g, PDBj:5i9g
PDBsum	5i9g
PubMed	27088764

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