Structure of PDB 5hrd Chain C

Receptor sequence
>5hrdC (length=177) Species: 10497 (African swine fever virus) [Search protein sequence]
GGGMLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKML
NDVDLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTY
QLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQT
LVPLKITTEKELIKELGFTYRIPKKRL
3D structure
PDB5hrd The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
ChainC
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C D49 D51 K85 D100 H115 F116 V120 D52 D54 K88 D103 H118 F119 V123
BS02 dna C V80 C81 G82 R84 K85 I124 R127 K131 K136 L137 N138 Q139 Y140 V83 C84 G85 R87 K88 I127 R130 K134 K139 L140 N141 Q142 Y143
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5hrd, PDBe:5hrd, PDBj:5hrd
PDBsum5hrd
PubMed
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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