Structure of PDB 5gnz Chain C

Receptor sequence

>5gnzC (length=447) Species: 256318 (metagenome)

SYRFPEGFLWGAATAAYQIEGSSMADGAGESIWDRFSHTPGNMKDGDTGD
VACDHYNRWREDIELMKRLNLQAYRFSVSWSRVIPQGRGAINPKGLAFYD
RLVDGLLEAGIEPLATLYHWDLPAALDDRGGWLNPDIADWFADYGQVLFE
KFKGRVKTWGTINEPWCIVDGGYLHGALAPGHRSAYEAVIAGHNVLRAHG
AAVRRFREVGEGQIGIVLNIEPKYPASDKPEDEAARRRAEAQMNRWFLDP
LMGRGYPEELTDVYGAAWREFPKEDFELIAEPTDWMGLNWYTRAVPENAP
DAWPTRSRPVRQTQHAHTETGWEVYPPALTDTLVWLSEQTGGKLPLMVTE
NGSAWYDPPHAIDGRIHDPMRVHYLQTHIKALHDAIGKGVDLRGYMVWSL
LDNLEWSLGYSKRFGIVHVNFATQERTIKDSGLFYAEVIKTHGDVLN

3D structure

• PDB: 5gnz Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
• Chain: C
• Resolution: 2.2 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	BGC	C	Q25 H126 E171 Y298 W329 E357 W405 E412 W413 F421	Q18 H119 E164 Y291 W322 E350 W398 E405 W406 F414

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Dec 1 11:12:26 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5gnz', asym_id = 'C', title = 'Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5gnz', asym_id='C', title='Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0004553,0005975,0008422,0030245', uniprot = '', pdbid = '5gnz', asym_id = 'C'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975,0008422,0030245', uniprot='', pdbid='5gnz', asym_id='C')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>