Structure of PDB 5gkd Chain C

Receptor sequence
>5gkdC (length=726) Species: 368405 (Paraglaciecola chathamensis) [Search protein sequence]
ADLLVKTPEAYDQALKKAKPGDDIILANGTWRDFEVLFEAKGNENKPITL
RGQTPGKVFLTGQSNLRLAGEHLIVSGLVFKDGYTPTGEVIAFRRNKDVL
ASHSRVTQVVIDNFSNPEKFEQDSWVMVYGRHNRFDHNHLVGKRNKGVTM
AVRLTTESSQQNHHRIDHNYFGPRPILGSNGGETLRIGTSHHSLTDSFTL
VENNYFDRCNGEVEIISNKSGKNSIRNNVFFESRGTLTLRHGNGNIVENN
VFFGNGVDHTGGIRVINRDQIIRNNYLEGLTGYRFGSGLTVMNGVPNSKI
NRYHQVDNALIENNTLVNVEHIQFAAGSDKERSAAPINSNMNNNLIVNDQ
GTDGITAFDDISGIKFKDNLLNQDAKPSINKGFEQADITMQRHDNGLLYP
EAKTQQKYGVSTQLEPIGKDEVGVSWYPKVEPDVAFGSGKHIAVSPGDNT
LFDAIASAETGDVLVLQAGEYWVSKILSLDKTLTIRAQEKGSAVIFPQRS
TLIEINNKGNLTLDGVYVDATNAPDAAGNTLIRTTRLPMQRNYRLAIKNS
TFENLDINHSYHFFDAGNRSFADYIEVQDSQFKHITGDLFRLNKETDDLG
IYNVEYLTIENSNVSDLQGAIAKVYRGGTDESTFGPHVVMNNNIFNEVGK
GKRNKSAASLILHGTQVNKMTTNEFNNSAPIIFELTVGEPKTWVTGNVFE
GTPEPVVRDLFPLSGATTTISGNTVL
3D structure
PDB5gkd Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6
ChainC
Resolution2.194 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA C N181 E184 E213 E215 N180 E183 E212 E214
BS02 CO3 C R241 R265 Y304 R240 R264 Y303
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5gkd, PDBe:5gkd, PDBj:5gkd
PDBsum5gkd
PubMed28154171
UniProtA0A1S4NYD7

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