Structure of PDB 5gip Chain C

Receptor sequence
>5gipC (length=122) Species: 2287 (Saccharolobus solfataricus) [Search protein sequence]
ASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVII
AEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILE
PGEAKDLVDEIIKRVNEIKGKT
3D structure
PDB5gip Box C/D guide RNAs recognize a maximum of 10 nt of substrates
ChainC
Resolution3.129 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C E41 K44 R48 E35 K38 R42
BS02 rna C K37 G38 T39 N40 E41 V60 Q61 I65 K86 L95 V97 A98 T99 K31 G32 T33 N34 E35 V54 Q55 I59 K80 L89 V91 A92 T93
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0004526 ribonuclease P activity
GO:0019843 rRNA binding
Biological Process
GO:0001682 tRNA 5'-leader removal
GO:0006412 translation
GO:0008033 tRNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5gip, PDBe:5gip, PDBj:5gip
PDBsum5gip
PubMed27625427
UniProtP55858|RL7A_SACS2 Large ribosomal subunit protein eL8 (Gene Name=rpl7ae)

[Back to BioLiP]