Structure of PDB 5gak Chain C

Receptor sequence

>5gakC (length=105) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFG
GQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKG
QALQF

3D structure

PDB

5gak Structure of the hypusinylated eukaryotic translation factor eIF-5A bound to the ribosome.

Chain

Resolution

3.88 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	C	V2 N3 V4 P5 R8 K9 T10 Y11 K13 R18 H20 Y28 K32 A33 F36 A37 Q38 G39 R41 R42 R45 K46 G49 F50 Q53 T54 P56 V57 F58 H59 K60 A62 K63 T65 K66 K67 R71 R80 Q82 L83 K86 K89 K97 K98 K100	V1 N2 V3 P4 R7 K8 T9 Y10 K12 R17 H19 Y27 K31 A32 F35 A36 Q37 G38 R40 R41 R44 K45 G48 F49 Q52 T53 P55 V56 F57 H58 K59 A61 K62 T64 K65 K66 R70 R79 Q81 L82 K85 K88 K96 K97 K99

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0008270	zinc ion binding

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:5gak, PDBe:5gak, PDBj:5gak
PDBsum	5gak
PubMed	26715760
UniProt	P0CX27\|RL44A_YEAST Large ribosomal subunit protein eL42A (Gene Name=RPL42A)