Structure of PDB 5fvc Chain C

Receptor sequence
>5fvcC (length=346) Species: 162145 (human metapneumovirus) [Search protein sequence]
LQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGEIL
YAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYQMLD
IHGVEKSWVEEIDKEARKTMATLLKESSGNIPQNQRPSAPDTPIILLCVG
ALIFTKLASTIEVGLETTVRRANRVLSDALKRYPRMDIPKIARSFYDLFE
QKVYHRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTMLRWGVIA
RSSNNIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPKAGLLSL
ANCPNFASVVLGNASGLGIIGMYRGRVPNTELFSAAESYAKSLKES
3D structure
PDB5fvc Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein.
ChainC
Resolution4.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C K171 S174 R185 R186 R189 V190 L243 N246 Q250 G255 T257 M258 W261 S314 M337 Y338 R339 G340 R341 K156 S159 R170 R171 R174 V175 L228 N231 Q235 G240 T242 M243 W246 S299 M322 Y323 R324 G325 R326
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5fvc, PDBe:5fvc, PDBj:5fvc
PDBsum5fvc
PubMed26880565
UniProtQ91F57

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