Structure of PDB 5ddp Chain C

Receptor sequence
>5ddpC (length=93) Species: 9606 (Homo sapiens) [Search protein sequence]
PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRG
QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK
3D structure
PDB5ddp Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
ChainC
Resolution2.302 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C Y12 N14 N15 E18 K21 K22 S45 R46 S47 L48 K49 M50 R51 Q53 F55 Q84 K87 T88 D89 S90 D91 Y10 N12 N13 E16 K19 K20 S43 R44 S45 L46 K47 M48 R49 Q51 F53 Q82 K85 T86 D87 S88 D89
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding

View graph for
Molecular Function
External links
PDB RCSB:5ddp, PDBe:5ddp, PDBj:5ddp
PDBsum5ddp
PubMed26655897
UniProtP09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A (Gene Name=SNRPA)

[Back to BioLiP]