Structure of PDB 5aka Chain C

Receptor sequence

>5akaC (length=267) Species: 83333 (Escherichia coli K-12) [Search protein sequence]

VKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRH
IGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRY
ILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQ
LARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLR
VLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTK
GKKTRSNKRTDKFIVRR

3D structure

PDB

5aka Ribosome-Srp-Ftsy Cotranslational Targeting Complex in the Closed State.

Chain

Resolution

5.7 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	C	R12 R13 H14 V16 K17 L23 A30 K38 G41 R42 N45 R47 I48 T49 T50 R51 H52 I53 Q59 Y61 R62 Y82 R86 L94 K96 D97 G98 K146 G148 K149 Q152 L153 A154 R155 A157 G158 T159 L175 R176 S177 G178 R181 E184 A197 M200 V203 L204 G205 K206 A207 G208 A209 R211 W212 R213 R216 V219 R220 G221 T222 A223 N225 V227 D228 H229 H231 G232 G233 G234 E235 G236 R237 N238 F239 G240 K241 H242 V244 P246 W247 V249 Q250 T251 K252 G253 K254 K255 R257 S258 K260	R10 R11 H12 V14 K15 L21 A28 K36 G39 R40 N43 R45 I46 T47 T48 R49 H50 I51 Q57 Y59 R60 Y80 R84 L92 K94 D95 G96 K144 G146 K147 Q150 L151 A152 R153 A155 G156 T157 L173 R174 S175 G176 R179 E182 A195 M198 V201 L202 G203 K204 A205 G206 A207 R209 W210 R211 R214 V217 R218 G219 T220 A221 N223 V225 D226 H227 H229 G230 G231 G232 E233 G234 R235 N236 F237 G238 K239 H240 V242 P244 W245 V247 Q248 T249 K250 G251 K252 K253 R255 S256 K258

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0016740	transferase activity
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0032297	negative regulation of DNA-templated DNA replication initiation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990082	DnaA-L2 complex
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5aka, PDBe:5aka, PDBj:5aka
PDBsum	5aka
PubMed	25775537
UniProt	P60422\|RL2_ECOLI Large ribosomal subunit protein uL2 (Gene Name=rplB)

[Back to BioLiP]