Structure of PDB 4yed Chain C

Receptor sequence
>4yedC (length=252) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
SVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALAR
TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECR
VTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVT
TGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGV
DCVFSTEALVYPQSDGTVCAMGFGAATMVTATFGFVAVSHALKKMMAKAA
RQ
3D structure
PDB4yed The Structure of Escherichia coli TcdA (Also Known As CsdL) Reveals a Novel Topology and Provides Insight into the tRNA Binding Surface Required for N(6)-Threonylcarbamoyladenosine Dehydratase Activity
ChainC
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP C G37 G39 G40 D61 K85 F108 V109 D130 P134 G36 G38 G39 D60 K84 F107 V108 D129 P133
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008641 ubiquitin-like modifier activating enzyme activity
GO:0016874 ligase activity
GO:0030955 potassium ion binding
GO:0031402 sodium ion binding
GO:0042803 protein homodimerization activity
GO:0061503 tRNA threonylcarbamoyladenosine dehydratase
Biological Process
GO:0061504 cyclic threonylcarbamoyladenosine biosynthetic process
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4yed, PDBe:4yed, PDBj:4yed
PDBsum4yed
PubMed26101842
UniProtQ46927|TCDA_ECOLI tRNA threonylcarbamoyladenosine dehydratase (Gene Name=tcdA)

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