Structure of PDB 4urn Chain C

Receptor sequence

>4urnC (length=186) Species: 1280 (Staphylococcus aureus)

GLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINK
DGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLGASVVNALSEWLEVEIHR
DGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKASTSFNFD
VLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYE

3D structure

• PDB: 4urn Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
• Chain: C
• Resolution: 2.3 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	NOV	C	N49 S50 E53 R79 M81 P82 I96 R138	N31 S32 E35 R61 M63 P64 I78 R100

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu Nov 28 16:50:06 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4urn', asym_id = 'C', title = 'Structures of Kibdelomycin Bound to Staphylococc...rb and Pare Showed a Novel U-Shaped Binding Mode.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4urn', asym_id='C', title='Structures of Kibdelomycin Bound to Staphylococc...rb and Pare Showed a Novel U-Shaped Binding Mode.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003677,0003918,0005524,0006265', uniprot = '', pdbid = '4urn', asym_id = 'C'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0003918,0005524,0006265', uniprot='', pdbid='4urn', asym_id='C')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>