Structure of PDB 3pu1 Chain C

Receptor sequence
>3pu1C (length=413) Species: 11277 (Vesicular stomatitis Indiana virus) [Search protein sequence]
SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDL
RGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDT
IGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPE
YRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMF
FHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILN
REVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWG
QLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVG
DNKYTPTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLRE
KTIGKYAKSEFDK
3D structure
PDB3pu1 Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus.
ChainC
Resolution3.14 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C R143 M149 E151 K155 N162 K165 R179 S212 Y215 I218 D224 A226 K286 S290 S291 V292 R312 N315 R317 R408 R142 M148 E150 K154 N161 K164 R178 S211 Y214 I217 D223 A225 K285 S289 S290 V291 R311 N314 R316 R399
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0019083 viral transcription
GO:0039703 RNA replication
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3pu1, PDBe:3pu1, PDBj:3pu1
PDBsum3pu1
PubMed21177817
UniProtP03521|NCAP_VSIVA Nucleoprotein (Gene Name=N)

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