Structure of PDB 3lob Chain C

Receptor sequence
>3lobC (length=309) Species: 12287 (Flock House virus) [Search protein sequence]
ALTRLSQPGLAFLKCAFAPPDFNTDPGKGIPDRFEGKVVSRKDVLNQSIS
FTAGQDTFILIAPTPGVAYWSASVPAGTFPTSATTFNPVNYPGFTSMFGT
TSTSRSNQVSSFRYASMNVGIYPTSNLMQFAGSITVWKCPVKLSTVQFPV
ATDPATSSLVHTLVGLNGVLAVGPDNFSESFIKGVFSQSACNEPNFQFND
ILQGIQTLPPANVSLGSTGQPFTMDSGAEATSGVVGWGNMDTIVIRVSAP
EGAVNSAILKAWSCIEYRPNPNAMLYQFGHDSPPLDEVALQEYRTVARSL
PVAVIAAQN
3D structure
PDB3lob Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate.
ChainC
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C A55 L56 K68 F240 E346 T349 S353 Q362 N363 A1 L2 K14 F186 E292 T295 S299 Q308 N309
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:3lob, PDBe:3lob, PDBj:3lob
PDBsum3lob
PubMed20164221
UniProtP12870|CAPSD_FHV Capsid protein alpha (Gene Name=alpha)

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