Structure of PDB 3kde Chain C

Receptor sequence
>3kdeC (length=74) Species: 7227 (Drosophila melanogaster) [Search protein sequence]
MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFND
SQWKAAKGQTFKRRRLNADAVPSK
3D structure
PDB3kde THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.
ChainC
Resolution1.74 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C M1 I17 H18 K21 Q42 R65 R66 R67 M1 I17 H18 K21 Q42 R63 R64 R65 PDBbind-CN: Kd=0.16uM
BS02 dna C M1 Y3 K5 N40 K54 F63 K64 R65 M1 Y3 K5 N40 K54 F61 K62 R63 PDBbind-CN: Kd=0.16uM
BS03 ZN C C4 C7 C44 H47 S75 K76 C4 C7 C44 H47 S73 K74
External links
PDB RCSB:3kde, PDBe:3kde, PDBj:3kde
PDBsum3kde
PubMed20010837
UniProtQ7M3K2|PELET_DROME Transposable element P transposase (Gene Name=T)

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