Structure of PDB 3ilq Chain C

Receptor sequence
>3ilqC (length=262) Species: 10090 (Mus musculus) [Search protein sequence]
NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQG
KLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEM
YASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSAT
VQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSRQLVCHVSGFYPKP
VWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRVKH
SSLGGQDIILYW
3D structure
PDB3ilq Lipid binding orientation within CD1d affects recognition of Borrelia burgorferi antigens by NKT cells.
ChainC
Resolution2.05 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 1O2 C F70 Y73 S76 F77 R79 D80 L84 I98 F120 W142 T156 F64 Y67 S70 F71 R73 D74 L78 I92 F111 W133 T147 MOAD: Kd=6.2uM
PDBbind-CN: -logKd/Ki=5.21,Kd=6.2uM
External links
PDB RCSB:3ilq, PDBe:3ilq, PDBj:3ilq
PDBsum3ilq
PubMed20080535
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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