Structure of PDB 3ikc Chain C

Receptor sequence

>3ikcC (length=217) Species: 10090 (Mus musculus) [Search protein sequence]

IVMTQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPK
LLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLR
TFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINV
KWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEA
THKTSTSPIVKSFNRNE

3D structure

PDB

3ikc The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen.

Chain

Resolution

2.6 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	KDO	C	Y32 S91 N92 R95	Y37 S96 N97 R100

External links

PDB	RCSB:3ikc, PDBe:3ikc, PDBj:3ikc
PDBsum	3ikc
PubMed	19767317

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