Structure of PDB 3dky Chain C

Receptor sequence
>3dkyC (length=201) Species: 1311 (Streptococcus agalactiae) [Search protein sequence]
EKARYFTFLLYPESIPSDWELKLETLGVPMAISPLHDKDKSSIKGQKYKK
AHYHVLYIAKNPVTADSVRKKIKLLLGEKSLAMVQVVLNVENMYLYLTHE
SKDAIAKKKHVYDKADIKLINNFDIDRYVTLDVEEKTELFNVVVSLIRAY
TLQNIFDLYDFIDENGETYGLTINLVNEVIAGKTGFMKLLFDGAYQRSKR
G
3D structure
PDB3dky Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains
ChainC
Resolution3.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN C H39 D42 H55 H57 H102 H36 D39 H52 H54 H99
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003916 DNA topoisomerase activity
GO:0042802 identical protein binding
Biological Process
GO:0006260 DNA replication
Cellular Component
GO:0005727 extrachromosomal circular DNA

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3dky, PDBe:3dky, PDBj:3dky
PDBsum3dky
PubMed19440202
UniProtP13921|REPB_STRAG Replication protein RepB (Gene Name=repB)

[Back to BioLiP]