Structure of PDB 2yaj Chain C

Receptor sequence
>2yajC (length=871) Species: 1548 (Clostridium scatologenes) [Search protein sequence]
EADIPEAKESTQKLMDIYYTLKVTADMEAAYWYNRTWWENDGEVIEVRRA
KAVAASLSHMTPTILPYEKLVMNKTKNVRGAFPFPWVCASFFNAQAEALM
NEVDAPAENEADSVSVVGAGGGNVTESYGNVISIAKKFGMRKEEIPVLVK
TSKPWEGISVEELSNKYSKMTPGYDQFKNIMESVICMFDSFAIPQGREVI
NYYMPLQYGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKEITK
GLSAWCENYSKRAKYLASIETDSEIKANYEKIEEVMGNIAHKKPANFWEA
IQMTLCCHFGVVNEDPQSGLSIGRLGQVLQPFYEKDVEDGIMTDEEVIEL
LELYRIKITCIECFASAGVSGGVLSGNTFNNLSLGGQNYDGLSAVTPLEY
LIVEAGMRNQTPQPTLSVLYDEKTPEDFLMKAASCTKLGLGYPAWMNNQT
GMNFMMRNYGPEGMDLHDARAWCLGGCLESAPGCFLPLEYNGKVTMIPGG
ASPTCGTGVHFIGMPKVLELVLTNGLDKRTGKQVYPPHNKKLDSYETMVN
QWKEYMELTTDVVNRCNNIQMDIWRKYNMPAVNSLLKPDCFKKGKHIGTM
GARYNSCINFESCGTITFVNSLSSIKKNVFDDSKFTIEEMTDAMLNNFGF
KTAYETEVFSPDFRESTDKSTKYEKIFAACVNAPKYGNADKYADEIFKAY
HYYIYDMTHKFRSYYGKPLYLCQISVSTHGPQGFVTLATADGRLAGTTYS
DGSVSAAAGTDKNGIYAIFESATVYDHSMHQNAQMNLKLHPTAVKGINGT
RKLLDLVRAYMRKGGFHVQFNVVDSKTLRDAQLTPEKYRELMVRVAGFTQ
YWCEIGKPIQDEVIYRTEYDK
3D structure
PDB2yaj Structural Basis for a Kolbe-Type Decarboxylation Catalyzed by a Glycyl Radical Enzyme.
ChainC
Resolution1.813 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) F405 G502 C503 G873
Catalytic site (residue number reindexed from 1) F379 G476 C477 G847
Enzyme Commision number 4.1.1.83: 4-hydroxyphenylacetate decarboxylase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 4HP C F214 R223 S344 G345 V399 F405 G502 C503 E505 H536 F537 E637 F188 R197 S318 G319 V373 F379 G476 C477 E479 H510 F511 E611
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016829 lyase activity
GO:0043722 4-hydroxyphenylacetate decarboxylase activity
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:2yaj, PDBe:2yaj, PDBj:2yaj
PDBsum2yaj
PubMed21823587
UniProtQ38HX4|HPDL_CLOSL 4-hydroxyphenylacetate decarboxylase glycyl radical subunit (Gene Name=csdB)

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