Structure of PDB 2ixl Chain C

Receptor sequence
>2ixlC (length=197) Species: 1307 (Streptococcus suis) [Search protein sequence]
MTENFFGKTLAARPVEAIPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGF
PESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLR
EGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVNDYWALEL
KPKYAFVNYADPSLDIKWENLEEAEVSEADENHPFLKDVKPLRKEDL
3D structure
PDB2ixl Rmlc, a C3' and C5' Carbohydrate Epimerase, Appears to Operate Via an Intermediate with an Unusual Twist Boat Conformation.
ChainC
Resolution1.6 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H76 K82 Y140 D180
Catalytic site (residue number reindexed from 1) H76 K82 Y140 D180
Enzyme Commision number 5.1.3.13: dTDP-4-dehydrorhamnose 3,5-epimerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 TRH C H76 E78 K82 W146 H76 E78 K82 W146
BS02 TRH C H29 R33 F36 E38 H29 R33 F36 E38
Gene Ontology
Molecular Function
GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity
GO:0016853 isomerase activity
Biological Process
GO:0019305 dTDP-rhamnose biosynthetic process
GO:0045226 extracellular polysaccharide biosynthetic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2ixl, PDBe:2ixl, PDBj:2ixl
PDBsum2ixl
PubMed17046787
UniProtQ8GIQ0

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