Structure of PDB 2ckf Chain C

Receptor sequence
>2ckfC (length=425) Species: 279135 (Sphingomonas sp. CHY-1) [Search protein sequence]
MSGDTTLVDTVNASQSRQVFWDRDVYDLEIERIFSRAWLMLGHKSLLPKP
GDFITTYMAEDKIILSHQSDGTFRAFINSCTHRGNQICHADSGNAKAFVC
NYHGWVYGQDGSLVDVPLESRCYHNKLDKQELAAKSVRVETYKGFIFGCH
DPEAPSLEDYLGEFRFYLDTIWEGGGAGLELLGPPMKSLLHCNWKVPVEN
FVGDGYHVGWTHAAALLGLQFTTRHGHGFGVIDNAAAAIHRKGDGWNKYL
EDTRGEVRRKFGADRERLYVGHWNGAIFPNCSFLYGTNTFKIWHPRGPHE
IEVWTYTMVPSDADPATKSAIQREATRTFGTAGTLESDDGENMSSATYVN
RGVITRDGMMNSTMGVGYEGPHPVYPGIVGISFIGETSYRGFYRFWKEMI
DAPDWASVKANDDNWDSVFTNRNFW
3D structure
PDB2ckf The Catalytic Pocket of the Ring-Hydroxylating Dioxygenase from Sphingomonas Chy-1.
ChainC
Resolution1.85 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) H103 D204 H207 H212 D360
Catalytic site (residue number reindexed from 1) H103 D204 H207 H212 D339
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 FES C C80 H82 R83 C100 Y102 H103 W105 C80 H82 R83 C100 Y102 H103 W105
BS02 FE C H207 H212 D360 H207 H212 D339
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
GO:0051537 2 iron, 2 sulfur cluster binding
Biological Process
GO:0009056 catabolic process
GO:0044237 cellular metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:2ckf, PDBe:2ckf, PDBj:2ckf
PDBsum2ckf
PubMed17157819
UniProtQ65AT1

[Back to BioLiP]