Structure of PDB 2bbv Chain C

Receptor sequence
>2bbvC (length=321) Species: 12285 (Black beetle virus) [Search protein sequence]
TQTAPVPQQNVPALTRLSQPGLAFLKCAFAPPDFNTDPGKGIPDRFEGKV
VTRKDVLNQSINFTANRDTFILIAPTPGVAYWVADVPAGTFPISTTTFNA
VNFPGFNSMFGNAAASRSDQVSSFRYASMNVGIYPTSNLMQFAGSITVWK
CPVKLSNVQFPVATTPATSALVHTLVGLDGVLAVGPDNFSESFIKGVFSQ
SVCNEPDFEFSDILEGIQTLPPANVTVATSGQPFNLAAGAEAVSGIVGWG
NMDTIVIRVSAPTGAVNSAILKTWACLEYRPNPNAMLYQFGHDSPPCDEV
ALQEYRTVARSLPVAVIAAQN
3D structure
PDB2bbv The refined three-dimensional structure of an insect virus at 2.8 A resolution.
ChainC
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna C A55 Q61 L64 K68 A13 Q19 L22 K26
BS02 peptide C R58 K68 A72 D75 E346 L354 P355 Q362 N363 R16 K26 A30 D33 E304 L312 P313 Q320 N321
BS03 CA C D221 G273 D179 G231
BS04 CA C D249 E251 D207 E209
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:2bbv, PDBe:2bbv, PDBj:2bbv
PDBsum2bbv
PubMed8289282
UniProtP04329|CAPSD_BBV Capsid protein alpha (Gene Name=alpha)

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