Structure of PDB 1yae Chain C

Receptor sequence
>1yaeC (length=257) Species: 10116 (Rattus norvegicus) [Search protein sequence]
NITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELST
ILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYV
REKVIDFSKPFMTLGISILYRKPDSADDLAKQTKIEYGAVEDGATMTFFK
KSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFV
TQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMK
EKWWRGN
3D structure
PDB1yae Structure of the kainate receptor subunit GluR6 agonist-binding domain complexed with domoic acid.
ChainC
Resolution3.11 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 DOQ C K487 Y488 G489 P516 A518 R523 A689 T690 E738 K65 Y66 G67 P94 A96 R101 A144 T145 E193
Gene Ontology
Molecular Function
GO:0015276 ligand-gated monoatomic ion channel activity
Cellular Component
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:1yae, PDBe:1yae, PDBj:1yae
PDBsum1yae
PubMed15677325
UniProtP42260|GRIK2_RAT Glutamate receptor ionotropic, kainate 2 (Gene Name=Grik2)

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